🌋 scvi-de-flask 💥

Differential expression on CeNGEN C. elegans single cell RNA sequencing data

This app allows you to quickly perform differential expression on single cell RNA sequencing data from the CeNGEN project 2020 data release, described in the preprint Molecular topography of an entire nervous system. Just select cell types and experiments to compare and some genes to highlight. It will produce an interactive volcano plot and table with results in ~15s.

This app uses scvi-tools. The code for the app is available on GitHub.

To highlight genes add one gene per line below. Gene names (bus-1) or ID are accepted (WBGene00018223)

Processing job...takes about 15s
Select group 1 cells
Select group 2 cells

Differential Expression Results

Enriched genes

Depleted genes